If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ), 'gf_id' => 'HOM05D000872', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000872' ), 'data_identifier' => 'HOM05D000872', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000872', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40260' => 'bna', 'A03p38130' => 'bna', 'A03p48540' => 'bna', 'A04p29240' => 'bna', 'A05p07860' => 'bna', 'A05p36290' => 'bna', 'A08p00360' => 'bna', 'A10p33740' => 'bna', 'Aa31LG10G530' => 'aar', 'Aa31LG1G23110' => 'aar', 'Aa31LG5G23420' => 'aar', 'Aa31LG8G540' => 'aar', 'Aa31sc177G40' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.2953' => 'aag', 'Actinidia11589' => 'ach', 'Actinidia14202' => 'ach', 'Actinidia14209' => 'ach', 'Actinidia16094' => 'ach', 'Actinidia20732' => 'ach', 'Actinidia21854' => 'ach', 'Actinidia23244' => 'ach', 'Actinidia27152' => 'ach', 'Actinidia29103' => 'ach', 'Actinidia31140' => 'ach', 'Actinidia33814' => 'ach', 'Ah.08g221170' => 'amhyb', 'Ah.09g231690' => 'amhyb', 'Ah.12g058530' => 'amhyb', 'Ah.15g099930' => 'amhyb', 'AL1G63770' => 'aly', 'AL1G63780' => 'aly', 'AL3G25140' => 'aly', 'AL4G35190' => 'aly', 'AL5G32320' => 'aly', 'AL6G10580' => 'aly', 'Aqoxy168s005' => 'aox', 'Aqoxy2G00909' => 'aox', 'Aqoxy4G02580' => 'aox', 'Aqoxy7G04199' => 'aox', 'arahy.Tifrunner.gnm1.ann1.083TJ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3F1CW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ALX9D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AFJ59D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BE5MC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IUKN41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IYM4LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT35IL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVNN45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TF94L7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL7SD7' => 'arhy', 'AT1G55720' => 'ath', 'AT1G55730' => 'ath', 'AT2G38170' => 'ath', 'AT3G13320' => 'ath', 'AT3G51860' => 'ath', 'AT5G01490' => 'ath', 'ATR0006G088' => 'atr', 'ATR0618G376' => 'atr', 'ATR0626G394' => 'atr', 'Atru.chr1.2771' => 'acertr', 'Atru.chr2.3779' => 'acertr', 'Atru.chr3.4222' => 'acertr', 'Atru.chr6.3449' => 'acertr', 'Atru.chr6.3451' => 'acertr', 'Atru.chr8.2240' => 'acertr', 'AUR62001648' => 'cqu', 'AUR62010463' => 'cqu', 'AUR62020128' => 'cqu', 'AUR62030445' => 'cqu', 'AUR62033060' => 'cqu', 'AUR62036066' => 'cqu', 'AUR62042213' => 'cqu', 'AUR62044492' => 'cqu', 'BcaB02g09216' => 'bca', 'BcaB02g10805' => 'bca', 'BcaB04g16934' => 'bca', 'BcaB04g18752' => 'bca', 'BcaB04g21009' => 'bca', 'BcaB06g25471' => 'bca', 'BcaB06g29035' => 'bca', 'BcaC01g01552' => 'bca', 'BcaC01g04000' => 'bca', 'BcaC02g07489' => 'bca', 'BcaC02g11957' => 'bca', 'BcaC05g29189' => 'bca', 'BcaC06g31959' => 'bca', 'BcaC06g31978' => 'bca', 'BcaC06g33011' => 'bca', 'BcaC06g33013' => 'bca', 'BcaC06g33356' => 'bca', 'BcaC06g33357' => 'bca', 'BcaC08g44212' => 'bca', 'BcaC09g48301' => 'bca', 'BcaNung03289' => 'bca', 'BcaNung03290' => 'bca', 'BcaNung03292' => 'bca', 'BolC1t05123H' => 'bol', 'BolC3t16898H' => 'bol', 'BolC3t21608H' => 'bol', 'BolC4t22557H' => 'bol', 'BolC4t28151H' => 'bol', 'BolC5t34125H' => 'bol', 'BolC6t36817H' => 'bol', 'BolC7t45179H' => 'bol', 'BolC9t60198H' => 'bol', 'BraA01t04062Z' => 'bra', 'BraA03t12966Z' => 'bra', 'BraA03t13959Z' => 'bra', 'BraA04t18393Z' => 'bra', 'BraA05t19752Z' => 'bra', 'BraA05t22430Z' => 'bra', 'BraA08t32094Z' => 'bra', 'BraA10t45404Z' => 'bra', 'C01p51740' => 'bna', 'C03p46290' => 'bna', 'C03p93040' => 'bna', 'C04p09510' => 'bna', 'C04p66470' => 'bna', 'C05p54600' => 'bna', 'C06p16200' => 'bna', 'C07p46640' => 'bna', 'C09p74660' => 'bna', 'CAN.G5.18' => 'can', 'CAN.G541.6' => 'can', 'CAN.G585.12' => 'can', 'CAN.G780.6' => 'can', 'CAN.G790.44' => 'can', 'CANSAT01G1599' => 'cansat', 'CANSAT35G1350' => 'cansat', 'CANSAT54G3014' => 'cansat', 'CANSAT64G2422' => 'cansat', 'CARHR045380' => 'chi', 'CARHR087930' => 'chi', 'CARHR132770' => 'chi', 'CARHR161490' => 'chi', 'CARHR211850' => 'chi', 'Carub.0001s4423' => 'cru', 'Carub.0003s1270' => 'cru', 'Carub.0004s2015' => 'cru', 'Carub.0005s1821' => 'cru', 'Carub.0006s0034' => 'cru', 'Ca_04439_v3' => 'car', 'Ca_05597_v3' => 'car', 'Ca_07640_v3' => 'car', 'Ca_16325_v3' => 'car', 'CBR_g29541' => 'cbr', 'CBR_g46889' => 'cbr', 'CBR_g50757' => 'cbr', 'Cc01_g14170' => 'ccan', 'Cc04_g00510' => 'ccan', 'Cc05_g09850' => 'ccan', 'Cc06_g01400' => 'ccan', 'CDE02G2224' => 'cde', 'CDE06G0380' => 'cde', 'CDE07G0542' => 'cde', 'CDE07G1483' => 'cde', 'Cfa011851' => 'cfa', 'Cfa016946' => 'cfa', 'Cfa021402' => 'cfa', 'Cfa023158' => 'cfa', 'Cfa023503' => 'cfa', 'Cfa026581' => 'cfa', 'Ciclev10008243m.g' => 'ccl', 'Ciclev10011720m.g' => 'ccl', 'Ciclev10013238m.g' => 'ccl', 'Ciclev10013780m.g' => 'ccl', 'Ciclev10025654m.g' => 'ccl', 'Ciclev10028412m.g' => 'ccl', 'CiPaw.04G198200' => 'cil', 'CiPaw.09G209000' => 'cil', 'CiPaw.10G156400' => 'cil', 'CiPaw.11G209400' => 'cil', 'CiPaw.12G141900' => 'cil', 'CiPaw.13G077800' => 'cil', 'CiPaw.14G059800' => 'cil', 'ClCG02G010570' => 'cla', 'ClCG03G000780' => 'cla', 'ClCG04G007020' => 'cla', 'ClCG07G014200' => 'cla', 'ClCG10G004160' => 'cla', 'ClCG10G022110' => 'cla', 'COL.COLO4_07771' => 'col', 'COL.COLO4_07772' => 'col', 'COL.COLO4_08428' => 'col', 'COL.COLO4_14540' => 'col', 'COL.COLO4_19155' => 'col', 'COL.COLO4_19703' => 'col', 'Cpa.g.sc11.155' => 'cpa', 'Cpa.g.sc12.88' => 'cpa', 'Cpa.g.sc415.5' => 'cpa', 'Cre09.g409750' => 'cre', 'Cre12.g519500' => 'cre', 'Cre16.g649466' => 'cre', 'CsaV3_1G036160' => 'csa', 'CsaV3_3G003980' => 'csa', 'CsaV3_3G031170' => 'csa', 'CsaV3_3G033810' => 'csa', 'CsaV3_4G026260' => 'csa', 'CsaV3_6G009790' => 'csa', 'CsaV3_UNG227800' => 'csa', 'CSS0000893' => 'camsi', 'CSS0006886' => 'camsi', 'CSS0007722' => 'camsi', 'CSS0034222' => 'camsi', 'CSS0036754' => 'camsi', 'DCAR_000767' => 'dca', 'DCAR_003722' => 'dca', 'DCAR_005892' => 'dca', 'DCAR_007374' => 'dca', 'DCAR_013815' => 'dca', 'DCAR_014865' => 'dca', 'DCAR_015419' => 'dca', 'DCAR_018704' => 'dca', 'DCAR_022633' => 'dca', 'DCAR_028845' => 'dca', 'DCAR_029648' => 'dca', 'Dinv05345' => 'din', 'Dinv07510' => 'din', 'Dinv08613' => 'din', 'Dinv10378' => 'din', 'Dinv14439' => 'din', 'Dinv20366' => 'din', 'Dinv21334' => 'din', 'Dinv22050' => 'din', 'Dinv23005' => 'din', 'Dinv23103' => 'din', 'Dinv26616' => 'din', 'Dinv26625' => 'din', 'Dinv28639' => 'din', 'Duzib093G0328' => 'dzi', 'Duzib106G0778' => 'dzi', 'Duzib128G0988' => 'dzi', 'Duzib133G1253' => 'dzi', 'Duzib150G1221' => 'dzi', 'Duzib168G1295' => 'dzi', 'Duzib170G0840' => 'dzi', 'Duzib213G0848' => 'dzi', 'Duzib268G0588' => 'dzi', 'Duzib268G0721' => 'dzi', 'ECA232G2299' => 'eca', 'ECA234G4843' => 'eca', 'ECA236G2575' => 'eca', 'ECA236G3592' => 'eca', 'ECA240G2686' => 'eca', 'ECA248G0754' => 'eca', 'ECA248G2968' => 'eca', 'EL10Ac5g12567' => 'bvu', 'EL10Ac7g16165' => 'bvu', 'EL10Ac8g19452' => 'bvu', 'Eucgr.A00502' => 'egr', 'Eucgr.B02256' => 'egr', 'Eucgr.J01913' => 'egr', 'Eucgr.J03144' => 'egr', 'FAN02G1733' => 'fan', 'FAN02G3296' => 'fan', 'FAN02G3867' => 'fan', 'FAN02G4363' => 'fan', 'FAN05G1186' => 'fan', 'FAN05G2736' => 'fan', 'FAN05G5120' => 'fan', 'FAN05G5259' => 'fan', 'FAN09G1008' => 'fan', 'FAN09G3895' => 'fan', 'FAN09G3913' => 'fan', 'FAN09G4416' => 'fan', 'FAN11G1528' => 'fan', 'FAN11G3475' => 'fan', 'FAN14G1512' => 'fan', 'FAN14G1857' => 'fan', 'FAN14G2270' => 'fan', 'FAN14G2569' => 'fan', 'FAN14G3385' => 'fan', 'FAN14G3795' => 'fan', 'FAN16G2135' => 'fan', 'FAN16G3038' => 'fan', 'FAN21G1911' => 'fan', 'FAN25G1505' => 'fan', 'FAN25G3427' => 'fan', 'FvH4_3g38530' => 'fve', 'FvH4_3g41890' => 'fve', 'FvH4_6g11490' => 'fve', 'FvH4_6g11493' => 'fve', 'FvH4_6g37510' => 'fve', 'FvH4_6g37511' => 'fve', 'FvH4_6g40200' => 'fve', 'Glyma.01G043925' => 'gma', 'Glyma.01G122800' => 'gma', 'Glyma.02G226500' => 'gma', 'Glyma.03G058300' => 'gma', 'Glyma.03G058500' => 'gma', 'Glyma.05G102600' => 'gma', 'Glyma.07G149600' => 'gma', 'Glyma.08G336900' => 'gma', 'Glyma.08G337000' => 'gma', 'Glyma.11G178700' => 'gma', 'Glyma.13G372100' => 'gma', 'Glyma.14G193400' => 'gma', 'Glyma.15G001600' => 'gma', 'Glyma.18G063200' => 'gma', 'Glyma.18G072200' => 'gma', 'Glyma.18G200500' => 'gma', 'Gohir.A01G094900' => 'ghi', 'Gohir.A01G227501' => 'ghi', 'Gohir.A04G002200' => 'ghi', 'Gohir.A04G090000' => 'ghi', 'Gohir.A05G088800' => 'ghi', 'Gohir.A08G002300' => 'ghi', 'Gohir.A09G164900' => 'ghi', 'Gohir.A13G129500' => 'ghi', 'Gohir.D01G079300' => 'ghi', 'Gohir.D01G217300' => 'ghi', 'Gohir.D04G130100' => 'ghi', 'Gohir.D05G089800' => 'ghi', 'Gohir.D05G387100' => 'ghi', 'Gohir.D08G013000' => 'ghi', 'Gohir.D09G160600' => 'ghi', 'Gohir.D13G132700' => 'ghi', 'Gorai.002G263600' => 'gra', 'Gorai.004G007100' => 'gra', 'Gorai.006G182300' => 'gra', 'Gorai.009G092200' => 'gra', 'Gorai.009G453800' => 'gra', 'Gorai.012G113600' => 'gra', 'Gorai.013G148900' => 'gra', 'GSVIVG01014774001' => 'vvi', 'GSVIVG01016118001' => 'vvi', 'GSVIVG01024741001' => 'vvi', 'GSVIVG01030143001' => 'vvi', 'GSVIVG01033962001' => 'vvi', 'HanXRQChr01g0006231' => 'han', 'HanXRQChr04g0094181' => 'han', 'HanXRQChr05g0135761' => 'han', 'HanXRQChr06g0181501' => 'han', 'HanXRQChr06g0181511' => 'han', 'HanXRQChr08g0213961' => 'han', 'HanXRQChr09g0257471' => 'han', 'HanXRQChr09g0261681' => 'han', 'HanXRQChr10g0306681' => 'han', 'Haze_12568' => 'cav', 'Haze_21000' => 'cav', 'Haze_24320' => 'cav', 'Hma1.2p1_0962F.1_g241940' => 'hma', 'HPP92_002174' => 'vpl', 'HPP92_002236' => 'vpl', 'HPP92_002241' => 'vpl', 'HPP92_002367' => 'vpl', 'HPP92_010807' => 'vpl', 'HPP92_010998' => 'vpl', 'HPP92_010999' => 'vpl', 'HPP92_027594' => 'vpl', 'Hund04863' => 'sun', 'Hund11013' => 'sun', 'Hund22376' => 'sun', 'Lalb_Chr01g0023101' => 'lal', 'Lalb_Chr03g0043291' => 'lal', 'Lalb_Chr03g0043301' => 'lal', 'Lalb_Chr12g0206961' => 'lal', 'Lalb_Chr14g0376171' => 'lal', 'Lalb_Chr15g0082481' => 'lal', 'Lalb_Chr17g0337431' => 'lal', 'Lalb_Chr17g0337441' => 'lal', 'Lalb_Chr22g0349381' => 'lal', 'Lj1A138T71' => 'lonja', 'Lj1A802G34' => 'lonja', 'Lj1g0009913' => 'lja', 'Lj2A75T36' => 'lonja', 'Lj3A953T55' => 'lonja', 'Lj3g0011901' => 'lja', 'Lj5C26G8' => 'lonja', 'Lj6g0011071' => 'lja', 'LjContig00155g0020069' => 'lja', 'Lsat_1_v5_gn_0_6260' => 'lsa', 'Lsat_1_v5_gn_1_39720' => 'lsa', 'Lsat_1_v5_gn_4_23640' => 'lsa', 'Lsat_1_v5_gn_5_121441' => 'lsa', 'Lsat_1_v5_gn_5_12161' => 'lsa', 'Lsat_1_v5_gn_5_150660' => 'lsa', 'Lsat_1_v5_gn_5_171340' => 'lsa', 'Lsat_1_v5_gn_7_6240' => 'lsa', 'Lsat_1_v5_gn_7_87940' => 'lsa', 'Lsat_1_v5_gn_8_102180' => 'lsa', 'Lsat_1_v5_gn_8_70980' => 'lsa', 'Lsat_1_v5_gn_9_103240' => 'lsa', 'Lsat_1_v5_gn_9_124621' => 'lsa', 'Manes.01G005066' => 'mes', 'Manes.01G161800' => 'mes', 'Manes.01G161900' => 'mes', 'Manes.02G119600' => 'mes', 'Manes.03G081900' => 'mes', 'Manes.08G092100' => 'mes', 'Manes.09G103700' => 'mes', 'Manes.12G068100' => 'mes', 'Mapoly0014s0027' => 'mpo', 'Mapoly0030s0112' => 'mpo', 'Mapoly0030s0113' => 'mpo', 'MBI02_g32976_MAGBIO' => 'mbi', 'MBI05_g05308_MAGBIO' => 'mbi', 'MBI13_g09078_MAGBIO' => 'mbi', 'MBI14_g11282_MAGBIO' => 'mbi', 'MBI14_g19479_MAGBIO' => 'mbi', 'MBI15_g01640_MAGBIO' => 'mbi', 'MBI18_g20085_MAGBIO' => 'mbi', 'MBI18_g31320_MAGBIO' => 'mbi', 'MBI19_g32881_MAGBIO' => 'mbi', 'MBI19_g35575_MAGBIO' => 'mbi', 'MD03G1040300' => 'mdo', 'MD03G1070900' => 'mdo', 'MD04G1151600' => 'mdo', 'MD04G1151900' => 'mdo', 'MD09G1134300' => 'mdo', 'MD09G1157100' => 'mdo', 'MD09G1157400' => 'mdo', 'MD11G1041700' => 'mdo', 'MD11G1074900' => 'mdo', 'MD12G1165800' => 'mdo', 'MD17G1123100' => 'mdo', 'MD17G1143500' => 'mdo', 'Medtr2g105640' => 'mtr', 'Medtr3g082180' => 'mtr', 'Medtr4g016720' => 'mtr', 'Medtr5g070330' => 'mtr', 'Medtr7g068380' => 'mtr', 'Medtr8g033030' => 'mtr', 'MELO3C003294.2' => 'cme', 'MELO3C009170.2' => 'cme', 'MELO3C013463.2' => 'cme', 'MELO3C020552.2' => 'cme', 'MELO3C025789.2' => 'cme', 'MELO3C027813.2' => 'cme', 'MELO3C032282.2' => 'cme', 'MELO3C034694.2' => 'cme', 'MELO3C034952.2' => 'cme', 'Migut.I01148' => 'egut', 'Migut.J00174' => 'egut', 'Migut.L02011' => 'egut', 'Migut.M00523' => 'egut', 'MSTRG.10220' => 'ama', 'MSTRG.10899' => 'ama', 'MSTRG.15026' => 'ama', 'MSTRG.15027' => 'ama', 'MSTRG.19011' => 'ama', 'MSTRG.26809' => 'ama', 'MSTRG.4533' => 'ama', 'MSTRG.5577' => 'ama', 'MSTRG.6730' => 'ama', 'Nitab4.5_0000102g0080' => 'nta', 'Nitab4.5_0000335g0090' => 'nta', 'Nitab4.5_0000357g0280' => 'nta', 'Nitab4.5_0000505g0010' => 'nta', 'Nitab4.5_0000511g0060' => 'nta', 'Nitab4.5_0001022g0080' => 'nta', 'Nitab4.5_0001691g0040' => 'nta', 'Nitab4.5_0001811g0020' => 'nta', 'Nitab4.5_0001970g0020' => 'nta', 'Nitab4.5_0002885g0040' => 'nta', 'Nitab4.5_0003860g0060' => 'nta', 'Nitab4.5_0006205g0030' => 'nta', 'Nitab4.5_0007548g0030' => 'nta', 'Nitab4.5_0022808g0020' => 'nta', 'Nn1g07668' => 'nnu', 'Nn2g11477' => 'nnu', 'Nn2g13703' => 'nnu', 'Nn5g26762' => 'nnu', 'Nn6g31496' => 'nnu', 'Nn6g33886' => 'nnu', 'Oeu013825.1' => 'oeu', 'Oeu019530.1' => 'oeu', 'Oeu019533.1' => 'oeu', 'Oeu019534.1' => 'oeu', 'Oeu019535.1' => 'oeu', 'Oeu026481.1' => 'oeu', 'Oeu037955.2' => 'oeu', 'Oeu053406.4' => 'oeu', 'Oeu064501.1' => 'oeu', 'Os01g0557500' => 'osa', 'Os02g0138900' => 'osa', 'Os02g0314300' => 'osa', 'Os03g0397400' => 'osa', 'Os04g0653200' => 'osa', 'Os05g0594200' => 'osa', 'Peaxi162Scf00000g06125' => 'pax', 'Peaxi162Scf00034g00823' => 'pax', 'Peaxi162Scf00035g02310' => 'pax', 'Peaxi162Scf00038g02450' => 'pax', 'Peaxi162Scf00056g00255' => 'pax', 'Peaxi162Scf00111g00533' => 'pax', 'Peaxi162Scf00141g00927' => 'pax', 'Peaxi162Scf00466g00111' => 'pax', 'PGR031G1641' => 'pgr', 'PGR031G3540' => 'pgr', 'PGR083G2346' => 'pgr', 'PGR102G3349' => 'pgr', 'PGSC0003DMG400004158' => 'stu', 'PGSC0003DMG400007792' => 'stu', 'PGSC0003DMG400009182' => 'stu', 'PGSC0003DMG400011787' => 'stu', 'PGSC0003DMG400031085' => 'stu', 'Phvul.005G184600' => 'pvu', 'Phvul.006G060800' => 'pvu', 'Phvul.006G067900' => 'pvu', 'Phvul.008G104500' => 'pvu', 'Phvul.008G261500' => 'pvu', 'Phvul.010G001500' => 'pvu', 'Potri.001G251200' => 'ptr', 'Potri.001G469800' => 'ptr', 'Potri.006G099900' => 'ptr', 'Potri.009G045800' => 'ptr', 'Potri.010G249200' => 'ptr', 'Potri.011G166900' => 'ptr', 'Potri.016G115500' => 'ptr', 'Pp3c10_2650' => 'ppa', 'Pp3c13_20070' => 'ppa', 'Pp3c14_9160' => 'ppa', 'Pp3c1_26780' => 'ppa', 'Pp3c2_19660' => 'ppa', 'Prupe.3G168500' => 'ppe', 'Prupe.3G192400' => 'ppe', 'Prupe.6G032600' => 'ppe', 'Prupe.6G057700' => 'ppe', 'Prupe.6G276800' => 'ppe', 'Prupe.6G277000' => 'ppe', 'Psat2g058640' => 'psa', 'Psat2g093080' => 'psa', 'Psat3g128600' => 'psa', 'Psat3g128640' => 'psa', 'Psat4g113680' => 'psa', 'Psat5g110640' => 'psa', 'Psat5g307200' => 'psa', 'PSO135G0301' => 'pso', 'PSO135G0802' => 'pso', 'PSO339G2814' => 'pso', 'PSO339G3742' => 'pso', 'PSO384G4309' => 'pso', 'PSO541G0336' => 'pso', 'PSO675G1315' => 'pso', 'PSO801G0141' => 'pso', 'QL01p038236' => 'qlo', 'QL04p065735' => 'qlo', 'QL05p084056' => 'qlo', 'QL05p084058' => 'qlo', 'QL05p084069' => 'qlo', 'QL07p035739' => 'qlo', 'QL07p035755' => 'qlo', 'QL08p001244' => 'qlo', 'QL08p001284' => 'qlo', 'QL08p001292' => 'qlo', 'QL08p001309' => 'qlo', 'QL08p001369' => 'qlo', 'RcHm_v2.0_Chr2g0150371' => 'rch', 'RcHm_v2.0_Chr2g0150381' => 'rch', 'RcHm_v2.0_Chr2g0150391' => 'rch', 'RcHm_v2.0_Chr2g0155221' => 'rch', 'RcHm_v2.0_Chr3g0463181' => 'rch', 'RcHm_v2.0_Chr3g0463191' => 'rch', 'RcHm_v2.0_Chr5g0069431' => 'rch', 'RcHm_v2.0_Chr5g0075081' => 'rch', 'RcHm_v2.0_Chr7g0199401' => 'rch', 'Rhsim05G0214700' => 'rsi', 'Rhsim06G0181700' => 'rsi', 'Rhsim06G0182600' => 'rsi', 'Rhsim06G0182700' => 'rsi', 'Rhsim08G0246400' => 'rsi', 'Rhsim12G0213800' => 'rsi', 'Rhsim13G0069600' => 'rsi', 'Sabra06G0076800' => 'sbr', 'Sabra09G0032900' => 'sbr', 'Sabra11G0139400' => 'sbr', 'Sabra16G0111400' => 'sbr', 'Sabra16G0152800' => 'sbr', 'Sabra16G0318600' => 'sbr', 'SalBow4G0783' => 'sbo', 'SalBow5G1461' => 'sbo', 'SalBow5G4082' => 'sbo', 'SalBow5G5084' => 'sbo', 'SalBow6G1532' => 'sbo', 'SalBow7G2267' => 'sbo', 'SalBow8G4298' => 'sbo', 'Sc01g0006470' => 'sci', 'Sc10g0008550' => 'sci', 'Sc21g0006320' => 'sci', 'Sc22g0002490' => 'sci', 'Sed0000289' => 'sed', 'Sed0002669' => 'sed', 'Sed0003782' => 'sed', 'Sed0004472' => 'sed', 'Sed0006397' => 'sed', 'Sed0010573' => 'sed', 'Sed0015413' => 'sed', 'Sed0018346' => 'sed', 'SEGI_12065' => 'sgi', 'SEGI_29471' => 'sgi', 'SEGI_36541' => 'sgi', 'SGA_v2.0_scaffold110G31216' => 'sas', 'SGA_v2.0_scaffold122G33297' => 'sas', 'SGA_v2.0_scaffold495G52463' => 'sas', 'SGA_v2.0_scaffold71G23957' => 'sas', 'SGA_v2.0_scaffold85G26736' => 'sas', 'SHI12830' => 'shi', 'SHI21642' => 'shi', 'SHI24214' => 'shi', 'SMO353G0318' => 'smo', 'Solyc03g123790.4' => 'sly', 'Solyc06g006110.3' => 'sly', 'Solyc07g056110.3' => 'sly', 'Solyc09g005260.4' => 'sly', 'Solyc12g011070.3' => 'sly', 'Solyc12g011080.3' => 'sly', 'Solyc12g055750.3' => 'sly', 'Sopen03g041550' => 'spe', 'Sopen06g002060' => 'spe', 'Sopen07g029470' => 'spe', 'Sopen09g001230' => 'spe', 'Sopen12g006440' => 'spe', 'Sopen12g024220' => 'spe', 'Sp1g41310' => 'spa', 'Sp3g11520' => 'spa', 'Sp4g20490' => 'spa', 'Sp5g10410' => 'spa', 'Sp6g40770' => 'spa', 'TAR623G1427' => 'tar', 'TAR624G0433' => 'tar', 'TAR627G0257' => 'tar', 'TAR633G0602' => 'tar', 'TAR636G3607' => 'tar', 'THA.LOC104805869' => 'tha', 'THA.LOC104805884' => 'tha', 'THA.LOC104806608' => 'tha', 'THA.LOC104816189' => 'tha', 'THA.LOC104822707' => 'tha', 'Thecc.01G202000' => 'tca', 'Thecc.05G016500' => 'tca', 'Thecc.07G003600' => 'tca', 'Thecc.07G003700' => 'tca', 'Thecc.07G003800' => 'tca', 'Thecc.09G302000' => 'tca', 'Thhalv10010359m.g' => 'esa', 'Thhalv10011487m.g' => 'esa', 'Thhalv10013404m.g' => 'esa', 'Thhalv10016611m.g' => 'esa', 'Thhalv10020742m.g' => 'esa', 'TPR.G11107' => 'tpr', 'TPR.G13329' => 'tpr', 'TPR.G13343' => 'tpr', 'TPR.G17635' => 'tpr', 'TPR.G20374' => 'tpr', 'TPR.G22039' => 'tpr', 'TPR.G23125' => 'tpr', 'TPR.G31783' => 'tpr', 'TPR.G5729' => 'tpr', 'TPR.G8129' => 'tpr', 'TPR.G8146' => 'tpr', 'TWI31G0154' => 'twi', 'TWI36G0402' => 'twi', 'TWI38G1610' => 'twi', 'TWI74G1548' => 'twi', 'TWI75G0634' => 'twi', 'TWI77G0517' => 'twi', 'unitig_26.g9091' => 'ugi', 'unitig_62.g23496' => 'ugi', 'unitig_748.g7078' => 'ugi', 'unitig_748.g7079' => 'ugi', 'vmacro02962' => 'vma', 'vmacro12036' => 'vma', 'vmacro12037' => 'vma', 'vmacro17065' => 'vma', 'vmacro18706' => 'vma', 'vmacro20261' => 'vma', 'VMungo0331G0939' => 'vmu', 'VMungo0540G0675' => 'vmu', 'VMungo0540G1763' => 'vmu', 'VMungo0647G0893' => 'vmu', 'VMungo1080G0424' => 'vmu', 'VMungo1383G2692' => 'vmu', 'Zm00001eb019340' => 'zma', 'Zm00001eb067920' => 'zma', 'Zm00001eb162620' => 'zma', 'Zm00001eb231990' => 'zma', 'Zm00001eb233160' => 'zma', 'Zm00001eb342260' => 'zma', 'Zm00001eb345450' => 'zma', 'Zm00001eb392740' => 'zma', 'Zm00001eb432390' => 'zma' ) $gf_id = 'HOM05D000872' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000872' ) $data_identifier = 'HOM05D000872' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 17, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 9, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 5, 'dca' => (int) 11, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 1, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 9, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 12, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 4, 'ama' => (int) 9, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 12, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1